| IATA | ICAO | Name | City | Type | Score |
|---|---|---|---|---|---|
| JUB | HJJJ | Juba International Airport | Juba | large airport | 1 000 |
| MAK | HSSM | Malakal International Airport | Malakal | medium airport | 750 |
| WUU | HSWW | Wau Airport | Wau | medium airport | 750 |
| RBX | — | Rumbek Airport | Rumbek | small airport | 100 |
| AEE | — | Adareil Airport | Adar | small airport | 50 |